Positive selection driving diversification in plant secondary metabolism

Proc Natl Acad Sci U S A. 2006 Jun 13;103(24):9118-23. doi: 10.1073/pnas.0601738103. Epub 2006 Jun 5.

Abstract

In Arabidopsis thaliana and related plants, glucosinolates are a major component in the blend of secondary metabolites and contribute to resistance against herbivorous insects. Methylthioalkylmalate synthases (MAM) encoded at the MAM gene cluster control an early step in the biosynthesis of glucosinolates and, therefore, are central to the diversification of glucosinolate metabolism. We sequenced bacterial artificial chromosomes containing the MAM cluster from several Arabidopsis relatives, conducted enzyme assays with heterologously expressed MAM genes, and analyzed MAM nucleotide variation patterns. Our results show that gene duplication, neofunctionalization, and positive selection provide the mechanism for biochemical adaptation in plant defense. These processes occur repeatedly in the history of the MAM gene family, indicating their fundamental importance for the evolution of plant metabolic diversity both within and among species.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Arabidopsis Proteins / classification
  • Arabidopsis Proteins / genetics*
  • Arabidopsis Proteins / metabolism
  • Arabidopsis* / genetics
  • Arabidopsis* / metabolism
  • Codon
  • Evolution, Molecular
  • Genetic Variation*
  • Glucosinolates / biosynthesis
  • Molecular Sequence Data
  • Multigene Family
  • Oxo-Acid-Lyases / classification
  • Oxo-Acid-Lyases / genetics*
  • Oxo-Acid-Lyases / metabolism
  • Phylogeny
  • Selection, Genetic*
  • Sequence Alignment
  • Sequence Analysis, DNA

Substances

  • Arabidopsis Proteins
  • Codon
  • Glucosinolates
  • Oxo-Acid-Lyases
  • methylthioalkylmalate synthase 1

Associated data

  • GENBANK/AM180569
  • GENBANK/AM180570
  • GENBANK/AM180571
  • GENBANK/AM180572
  • GENBANK/AM180573
  • GENBANK/AM180574
  • GENBANK/AM180575
  • GENBANK/AM180576
  • GENBANK/AM180577
  • GENBANK/AM180578
  • GENBANK/AM180579
  • GENBANK/AM180580
  • GENBANK/AM180581
  • GENBANK/AM180582
  • GENBANK/AM180583
  • GENBANK/AM180584
  • GENBANK/AM180585