DNAscan is a fast and efficient bioinformatics pipeline that allows for the analysis of DNA Next Generation sequencing data, requiring very little computational effort and memory usage.

DNAscan2 is a fast and efficient bioinformatics pipeline that allows for the analysis of DNA Next Generation sequencing data, requiring very little computational effort and memory usage

Nextflow workflow for basic HiC data processing

Whole Exome Sequencing (WES) analysis of a family trio (father, mother, proband) using command-line tools on a Linux HPC cluster. The pipeline includes quality control, read alignment, variant calling, and annotation, adapted from the GALAXY platform.

Coverage analysis of the data from the targeted-sequencing experiment of Hummingbirds (data from the paper Fonseca et al. 2018)

In this module, you will learn how to perform the bioinformatics analysis of differential chromatin occupancy using data generated by three well-known high-throughput sequencing assaying, including differences between them and integration of chromatin accessibility and differential gene expression

pipeline for analyzing metagenomic data from environmental samples in linux

Material used for a bioinformatics computer lab course, covering DNA/RNA sequence assembly and analysis, phylogenetic analysis, gene functional annotation, and metagenomic analysis