🧪 Reproducing the concept of Confocal Laser Scanning Microscope. Using Arduino and easily found materials. Generating images in Grayscale just for fun.

An ImageJ plugin to quantify ciliary shape, length, and fluorescence.

3D Analysis of confocal images of microbial biofilms/communities

Imaging experiments in Biology often involve the acquisition of confocal z-stack images to quantify fluorescent signal in a biological sample. These z-stacks are usually analyzed using open-source programs such as FIJI, which are notoriously frustrating to work with, and do not facility intuitive high-throughput analysis of many images at once. …

Semi-automated script for detection and quantification of c-Fos cells in IHC stained confocal stack images

A tool to accurately normalize and visualize protein distribution in 3D structures imaged with confocal microscopy using z-stacks.

Used for making overviews of larger batches of images obtained with cells under various condition. Initialized as GUI-based format, which can be modified, as more functionalities are added along the way.

[Pillow] Denoising Images retrieved from Confocal Calcium Imaging.

Python project using Pyimagej to filter images, quantify and analyse particles in mouse brain slices.