Full Changelog: v2.2.0...v2.2.1

What's Changed

• Add stats_OvA.png. Fix OvA exception handling. Replace colons and dots in OvA paths and results files, respectively. by @bednarsky in #42
• Bug fix: reference_group variable renamed to group in last PR by @bednarsky in #43
• Remove interaction OvA. Update documentation. by @bednarsky in #44

Full Changelog: v2.1.3...v2.2.0

Full Changelog: v2.1.2...v2.1.3

What's Changed

• Fix OvA to work with all types of models by @bednarsky in #40

Full Changelog: v2.1.1...v2.1.2

• make all resource files input to rules

Full Changelog: v2.1.0...v2.1.1

Features

• One-vs-all (OvA) analysis on modeled and specified covariates using contrasts, enabling automated comparison of each group against all others (e.g., cell types).

Minor improvements and exception handling

What's Changed

• Add model matrix as output in rule to allow custom downstream rules to see it by @bednarsky in #30
• Fix handling of index error for no degs at all by @bednarsky in #31

New Contributors

• @bednarsky made their first contribution in #30

Full Changelog: v2.0.1...v2.1.0

• improve DEA statistics bar plot
• improve continuity by enabling end-to-end compatibility with downstream modules
• to enable module usage using github() directive
  • source utils.R via paramsinstead ofsnakemake@source`
  • comment global.yaml (now requires full snakemake installation, not minimal)
• add nodefaults to all env YAML

What's Changed

• Fix typo in heatmap.R by @burtonjake in #23
• Make clear that annotation.csv can contain multiple rows per analysis by @burtonjake in #25
• Protect aggregate.R from crashing when there are no filtered features. by @burtonjake in #24

New Contributors

• @burtonjake made their first contribution in #23

Full Changelog: v2.0.0...v2.0.1

Breaking change: Requires Snakemake >= v8.20.1

Full Changelog: v1.0.3...v2.0.0

Full Changelog: v1.0.2...v1.0.3

Full Changelog: v1.0.1...v1.0.2